Skip to content

Single-cell Multi-omics Data Analysis Tutorial

Author: Xin Liu
Time: 10 min
Words: 1.8k words
Updated: 2025-11-07
Reads: 0 times
SeekSoulOnline User Guide Single-cell Multi-omics SeekARC

Getting Started

Start your analysis after logging in to SeekSoulOnline.

View Getting Started ›
Publication

Databases

Centrally store and manage user sample data and functional gene sets so they can be referenced directly in analysis workflows.

My Data

Manage your sample data with support for purchasing and uploading.

View Details ›

My Database

Collect curated functional gene sets for differential enrichment analyses.

View Details ›

My Gene Sets

Collect curated gene sets for annotation and scoring analyses.

View Details ›

Settings

SeekSoulOnline supports configuring parameter templates and updating personal information.

Parameter Templates

  • Customize analysis parameters
  • Customize color templates
View Details ›

Profile

  • Account information
  • Change password
View Details ›

Standard Analysis

SeekSoulOnline provides knowledge bases and tools for single-cell experimental quality control and standardization, helping researchers precisely manage sample preparation and quality evaluation to improve efficiency and support systematic standardization.

Basic Analysis

  • Data preprocessing and quality control
  • Dimensionality reduction and clustering analysis
  • Foundational visualization methods
View Details ›

Cell Annotation

  • Cell type identification methods
  • Marker gene analysis
  • Annotation strategies and tips
View Details ›

Plotting Tools

  • Overview of multiple plot types
  • Parameter configuration and optimization
  • Plot export and sharing
View Details ›

Feature Analysis

  • Gene set activity analysis
  • Cell function scoring analysis
View Details ›

Differential Enrichment

  • Differential gene identification
  • Enrichment analysis
  • GSEA analysis
View Details ›

Subcluster Selection

  • Filter subcluster data
  • Filter cells
View Details ›

Advanced Analysis

  • Cell-cell communication analysis
  • Pseudotime analysis and more
View Details ›

Interactive Analysis

  • Dimensionality reduction visualization
  • Edit labels
View Details ›

Supporting Information

  • Data download (permissions)
  • Metadata management
View Details ›

Results Overview

  • Consolidated result presentation
  • Result export and sharing
View Details ›

Smart Support

SeekSoulOnline’s AI expert for single-cell experimental experience, cell annotation, and frequently asked questions.

View Support ›
寻小因

Documentation Center

This center consolidates standardized documentation covering the entire workflow from experimental preparation and sequencing to data analysis, providing clear and accurate operational guidance and theoretical support to ensure your research progresses efficiently.

View Documentation Center ›
Datasets
0 comments·0 replies